Archive | September, 2009

APIs + Sequence Data Management = Haplotype Tables

We've heard lots of requests from customers not only to provide them with powerful methods for detection variants across multiple experiments (or phenotypes, or organisms, or lines), but for unifying all of this data to find knowledge that spans these experiments. Of course we have our variant calling workflow, just as we integrate with other variant ...

Guiding Principle of GenomeQuest 6.0Beta Platform

The guiding principle of the development of the GenomeQuest 6.0Beta platform is to support the complete "sequence cycle" – from uploading raw reads, to mapping them to an arbitrary reference, to generating knowledge through a variety of workflows, and then ultimately through to the assembly of those reads for use as the reference for tomorrow's ...

Do we have to fear the “Public Option?”

The recent article "Tear Down This Firewall: Pharma Scientists Call for a Pre-competitive Approach to Bioinformatics" signals a watershed event in the evolution of commercial bioinformatics industry. Faced with the dual forces of budget pressures and need to invest or die, pharma is giving itself "permission" to consider economic alternatives to ...

What are you best at?

Recently I met with a genomics executive at a Biotech who expressed frustration that by appearances, NGS software vendors appear similar. I agree with his assessment if you just look at the web sites. Customers can play a role in helping the vendor community communicate (and compete) better by asking this simple question: "What are ...